Harman GE, Howell CR, Viterbo A, Chet I, Lorito M. Trichoderma species—opportunistic, avirulent plant symbionts. Nat Rev Microbiol. 2004;2:43–56.
Vinale F, Sivasithamparam K, Ghisalberti EL, Marra R, Woo SL, Lorito M. Trichoderma–plant–pathogen interactions. Soil Biol Biochem. 2008;40:1–10.
Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP. Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol. 2011;9:749–59.
Gusakov AV. Alternatives to Trichoderma reesei in biofuel production. Trends Biotechnol. 2011;29:419–25.
Chukwuma OB, Rafatullah M, Tajarudin HA, Ismail N. Lignocellulolytic enzymes in biotechnological and industrial processes: a review. Sustainability. 2020;12:7282.
Berlin A. No barriers to cellulose breakdown. Science. 2013;342:1454–6.
Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 2014;42:D490–5.
Chandel AK, Chandrasekhar G, Silva MB, Silvério da Silva S. The realm of cellulases in biorefinery development. Crit Revi Biotechnol. 2012;32:187–202.
Wang Y, Leng L, Islam MK, Liu F, Lin CSK, Leu S-Y. Substrate-related factors affecting cellulosome-induced hydrolysis for lignocellulose valorization. Int J Mol Sci. 2019;20:3354.
Van der Zwan T, Sigg A, Hu J, Chandra RP, Saddler JN. Enzyme-mediated lignocellulose liquefaction is highly substrate-specific and influenced by the substrate concentration or rheological regime. Front Bioeng Biotechnol. 2020;8:917.
Huberman LB, Liu J, Qin L, Glass NL. Regulation of the lignocellulolytic response in filamentous fungi. Fungal Biol Rev. 2016;30:101–11.
Schaller M, Borelli C, Korting HC, Hube B. Hydrolytic enzymes as virulence factors of Candida albicans. Mycoses. 2005;48:365–77.
Labbaoui H, Bogliolo S, Ghugtyal V, Solis NV, Filler SG, Arkowitz RA, Bassilana M. Role of Arf GTPases in fungal morphogenesis and virulence. PLoS Pathog. 2017;13: e1006205.
Militello R, Colombo MI. Small GTPases as regulators of cell division. Commun Integr Biol. 2013;6: e25460.
Takai Y, Sasaki T, Matozaki T. Small GTP-binding proteins. Physiol Rev. 2001;81:153–208.
Kahn RA, Cherfils J, Elias M, Lovering RC, Munro S, Schurmann A. Nomenclature for the human Arf family of GTP-binding proteins: ARF, ARL, and SAR proteins. J Cell Biol. 2006;172:645–50.
Kahn RA, Gilman AG. Purification of a protein cofactor required for ADP-ribosylation of the stimulatory regulatory component of adenylate cyclase by cholera toxin. J Biol Chem. 1984;259:6228–34.
Agrawal G, Subramani S. Emerging role of the endoplasmic reticulum in peroxisome biogenesis. Front Physiol. 2013;4:286.
Ackema KB, Hench J, Böckler S, Wang SC, Sauder U, Mergentaler H, Westermann B, Bard F, Frank S, Spang A. The small GTP ase Arf1 modulates mitochondrial morphology and function. EMBO J. 2014;33:2659–75.
Tao C, Wang Z, Liu S, Lv N, Deng X, Xiong W, Shen Z, Zhang N, Geisen S, Li R. Additive fungal interactions drive biocontrol of Fusarium wilt disease. New Phytol. 2023;238:1198–214.
Xia Y, Wang J, Guo C, Xu H, Wang W, Yang M, Shen Q, Zhang R, Miao Y. Exploring the multi-level regulation of lignocellulases in the filamentous fungus Trichoderma guizhouense NJAU4742 from an omics perspective. Microb Cell Fact. 2022;21:1–14.
Bahn Y-S, Xue C, Idnurm A, Rutherford JC, Heitman J, Cardenas ME. Sensing the environment: lessons from fungi. Nat Rev Microbiol. 2007;5:57–69.
Grimm L, Kelly S, Krull R, Hempel D. Morphology and productivity of filamentous fungi. Appl Microbiol Biotechnol. 2005;69:375–84.
Mukherjee S, Khowala S. Secretion of cellobiase is mediated via vacuoles in Termitomyces clypeatus. Biotechnol Prog. 2002;18:1195–200.
Richards A, Veses V, Gow NA. Vacuole dynamics in fungi. Fungal Biol Rev. 2010;24:93–105.
Veses V, Richards A, Gow NA. Vacuoles and fungal biology. Curr Opin Microbiol. 2008;11:503–10.
Zhu H, Li T, Li C, Liu Y, Miao Y, Liu D, Shen Q. Intracellular kynurenine promotes acetaldehyde accumulation, further inducing the apoptosis in soil beneficial fungi Trichoderma guizhouense NJAU4742 under acid stress. Environ Microbiol. 2023;25:331–51.
Haddad JJ. A redox microenvironment is essential for MAPK-dependent secretion of pro-inflammatory cytokines: modulation by glutathione (GSH/GSSG) biosynthesis and equilibrium in the alveolar epithelium. Cell Immunol. 2011;270:53–61.
Moley K, Mueckler M. Glucose transport and apoptosis. Apoptosis. 2000;5:99–105.
Mason EF, Rathmell JC. Cell metabolism: an essential link between cell growth and apoptosis. Biochim Biophys Acta (BBA) Mol Cell Res. 2011;1813:645–54.
de Paula RG, Antoniêto ACC, Nogueira KMV, Ribeiro LFC, Rocha MC, Malavazi I, Almeida F, Silva RN. Extracellular vesicles carry cellulases in the industrial fungus Trichoderma reesei. Biotechnol Biofuels. 2019;12:1–14.
Tarkka M, Schrey S, Hampp R. Plant associated soil micro-organisms. In: Molecular mechanisms of plant and microbe coexistence. Berlin: Springer; 2008. p. 3–51.
Mendoza-Mendoza A, Zaid R, Lawry R, Hermosa R, Monte E, Horwitz BA, Mukherjee PK. Molecular dialogues between Trichoderma and roots: role of the fungal secretome. Fungal Biol Rev. 2018;32:62–85.
Liu G, Qu Y. Engineering of filamentous fungi for efficient conversion of lignocellulose: tools, recent advances and prospects. Biotechnol Adv. 2019;37:519–29.
van Peij NN, Gielkens MM, de Vries RP, Visser J, de Graaff LH. The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol. 1998;64:3615–9.
Rauscher R, Würleitner E, Wacenovsky C, Aro N, Stricker AR, Zeilinger S, Kubicek CP, Penttilä M, Mach RL. Transcriptional regulation of xyn1, encoding xylanase I, in Hypocrea jecorina. Eukaryot Cell. 2006;5:447–56.
Coradetti ST, Craig JP, Xiong Y, Shock T, Tian C, Glass NL. Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci. 2012;109:7397–402.
de la Serna I, Ng D, Tyler BM. Carbon regulation of ribosomal genes in Neurospora crassa occurs by a mechanism which does not require Cre-1, the homologue of the Aspergillus carbon catabolite repressor, CreA. Fungal Genet Biol. 1999;26:253–69.
Xiong Y, Sun J, Glass NL. VIB1, a link between glucose signaling and carbon catabolite repression, is essential for plant cell wall degradation by Neurospora crassa. PLoS Genet. 2014;10: e1004500.
Montenegro-Montero A, Goity A, Larrondo LF. The bZIP transcription factor HAC-1 is involved in the unfolded protein response and is necessary for growth on cellulose in Neurospora crassa. PLoS ONE. 2015;10: e0131415.
Arkowitz RA, Bassilana M. Regulation of hyphal morphogenesis by Ras and Rho small GTPases. Fungal Biol Rev. 2015;29:7–19.
Ma Y, Yang X, Xie M, Zhang G, Yang L, Bai N, Zhao Y, Li D, Zhang K-Q, Yang J. The Arf-GAP AoGlo3 regulates conidiation, endocytosis, and pathogenicity in the nematode-trapping fungus Arthrobotrys oligospora. Fungal Genet Biol. 2020;138: 103352.
Lew RR. How does a hypha grow? The biophysics of pressurized growth in fungi. Nat Rev Microbiol. 2011;9:509–18.
Riquelme M. Tip growth in filamentous fungi: a road trip to the apex. Annu Rev Microbiol. 2013;67:587–609.
Kurzątkowski W, Solecka J, Filipek J, Rozbicka B, Messner R, Kubicek C. Ultrastructural localization of cellular compartments involved in secretion of the low molecular weight, alkaline xylanase by Trichoderma reesei. Arch Microbiol. 1993;159:417–22.
Glenn M, Ghosh A, Ghosh BK. Subcellular fractionation of a hypercellulolytic mutant, Trichoderma reesei Rut-C30: localization of endoglucanase in microsomal fraction. Appl Environ Microbiol. 1985;50:1137–43.
Liu Y, Li T, Zhu H, Zhou Y, Shen Q, Liu D. Cysteine facilitates the lignocellulolytic response of Trichoderma guizhouense NJAU4742 by indirectly up-regulating membrane sugar transporters. Biotechnol Biofuels Bioprod. 2023;16:1–22.
Adnan M, Zheng W, Islam W, Arif M, Abubakar YS, Wang Z, Lu G. Carbon catabolite repression in filamentous fungi. Int J Mol Sci. 2017;19:48.
Biella S, Smith ML, Aist JR, Cortesi P, Milgroom MG. Programmed cell death correlates with virus transmission in a filamentous fungus. Proc R Soc Lond B. 2002;269:2269–76.
Yorimitsu T, Sato K, Takeuchi M. Molecular mechanisms of Sar/Arf GTPases in vesicular trafficking in yeast and plants. Front Plant Sci. 2014;5:411.
Williams M, Kim K. From membranes to organelles: emerging roles for dynamin-like proteins in diverse cellular processes. Eur J Cell Biol. 2014;93:267–77.
Li D, Zhao Z, Huang Y, Lu Z, Yao M, Hao Y, Zhai C, Wang Y. PsVPS1, a dynamin-related protein, is involved in cyst germination and soybean infection of Phytophthora sojae. PLoS ONE. 2013;8: e58623.
Chong X, Wang C, Wang Y, Wang Y, Zhang L, Liang Y, Chen L, Zou S, Dong H. The dynamin-like GTPase FgSey1 plays a critical role in fungal development and virulence in Fusarium graminearum. Appl Environ Microbiol. 2020;86:e02720-02719.
Low HH, Löwe J. A bacterial dynamin-like protein. Nature. 2006;444:766–9.
Yan S, Xu Y, Tao X-M, Yu X-W. Alleviating vacuolar transport improves cellulase production in Trichoderma reesei. Appl Microbiol Biotechnol. 2023;107:2483–99.
Idiris A, Tohda H, Sasaki M, Okada K, Kumagai H, Giga-Hama Y, Takegawa K. Enhanced protein secretion from multiprotease-deficient fission yeast by modification of its vacuolar protein sorting pathway. Appl Microbiol Biotechnol. 2010;85:667–77.
Marsalek L, Gruber C, Altmann F, Aleschko M, Mattanovich D, Gasser B, Puxbaum V. Disruption of genes involved in CORVET complex leads to enhanced secretion of heterologous carboxylesterase only in protease deficient Pichia pastoris. Biotechnol J. 2017;12:1600584.
Miao J, Wang M, Ma L, Li T, Huang Q, Liu D, Shen Q. Effects of amino acids on the lignocellulose degradation by Aspergillus fumigatus Z5: insights into performance, transcriptional, and proteomic profiles. Biotechnol Biofuels. 2019;12:1–19.
Xue D, Lin D, Gong C, Peng C, Yao S. Expression of a bifunctional cellulase with exoglucanase and endoglucanase activities to enhance the hydrolysis ability of cellulase from a marine Aspergillus niger. Process Biochem. 2017;52:115–22.
Xiao Z, Storms R, Tsang A. Microplate-based filter paper assay to measure total cellulase activity. Biotechnol Bioeng. 2004;88:832–7.
Bailey MJ, Biely P, Poutanen K. Interlaboratory testing of methods for assay of xylanase activity. J Biotechnol. 1992;23:257–70.
Valaškova V, Baldrian P. Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus—production of extracellular enzymes and characterization of the major cellulases. Microbiology. 2006;152:3613–22.
Zhang J, Miao Y, Rahimi MJ, Zhu H, Steindorff A, Schiessler S, Cai F, Pang G, Chenthamara K, Xu Y. Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi. Environ Microbiol. 2019;21:2644–58.
Hou B-H, Takanaga H, Grossmann G, Chen L-Q, Qu X-Q, Jones AM, Lalonde S, Schweissgut O, Wiechert W, Frommer WB. Optical sensors for monitoring dynamic changes of intracellular metabolite levels in mammalian cells. Nat Protoc. 2011;6:1818–33.
Druzhinina IS, Schmoll M, Seiboth B, Kubicek CP. Global carbon utilization profiles of wild-type, mutant, and transformant strains of Hypocrea jecorina. Appl Environ Microbiol. 2006;72:2126–33.
Chen Y, Liu J, Fan Y, Xiang M, Kang S, Wei D, Liu X. SNARE protein DdVam7 of the nematode-trapping fungus Drechslerella dactyloides regulates vegetative growth, conidiation, and the predatory process via vacuole assembly. Microbiol Spectr. 2022;10:e01872-01822.
Yu X, Pasternak T, Eiblmeier M, Ditengou F, Kochersperger P, Sun J, Wang H, Rennenberg H, Teale W, Paponov I. Plastid-localized glutathione reductase2-regulated glutathione redox status is essential for Arabidopsis root apical meristem maintenance. Plant Cell. 2013;25:4451–68.
Zhao X, Fang Y, Yang Y, Qin Y, Wu P, Wang T, Lai H, Meng L, Wang D, Zheng Z. Elaiophylin, a novel autophagy inhibitor, exerts antitumor activity as a single agent in ovarian cancer cells. Autophagy. 2015;11:1849–63.
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