Scientific Papers

Core gut microbes Cloacibacterium and Aeromonas associated with different gastropod species could be persistently transmitted across multiple generations | Microbiome


  • Fan Y, Pedersen O. Gut microbiota in human metabolic health and disease. Nat Rev Microbiol. 2021;19(1):55–71.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Rosshart SP, Vassallo BG, Angeletti D, Hutchinson DS, Morgan AP, Takeda K, et al. Wild mouse gut microbiota promotes host fitness and improves disease resistance. Cell. 2017;171(5):1015–28.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lin D, Zeng X, Sanogo B, He P, Xiang S, Du S, et al. The potential risk of Schistosoma mansoni transmission by the invasive freshwater snail Biomphalaria straminea in South China. PLoS Negl Trop Dis. 2020;14(6): e8310.

    Article 

    Google Scholar
     

  • Meier-Brook C. A snail intermediate host of Schistosoma mansoni introduced into Hong Kong. Bull World Health Organ. 1974;51(6):661.

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lin D, Xiang S, Sanogo B, Liang Y, Sun X, Wu Z. Molecular characterization of rotifers and their potential use in the biological control of Biomphalaria. Front Cell Infect Microbiol. 2021;11: 744352.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Tay WT, Gordon K. Going global – genomic insights into insect invasions. Curr Opin Insect Sci. 2019;31:123–30.

    Article 
    PubMed 

    Google Scholar
     

  • French NP, Gemmell NJ, Buddle BM. Advances in biosecurity to 2010 and beyond: towards integrated detection, analysis and response to exotic pest invasions. N Z Vet J. 2007;55(6):255–63.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Lester PJ, Beggs JR. Invasion success and management strategies for social Vespula wasps. Annu Rev Entomol. 2019;64:51–71.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Guo YH, Lv S, Gu WB, Liu HX, Wu Y, Zhang Y. Investigation on the species distribution and infection status of host snails of Angiostrongylus cantonensis in Shanghai (In Chinese). Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2014;32(6):455–8.

    PubMed 

    Google Scholar
     

  • Tomaz TP, Gentile R, Garcia JS, Teixeira BR, Faro MJ. A survey of freshwater and terrestrial snails in a predominantly urban municipality of Rio de Janeiro State, Brazil, with emphasis on human parasites vectors. Rev Inst Med Trop Sao Paulo. 2018;60: e76.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Ji L, Yiyue X, Xujin H, Minghui Z, Mengying Z, Yue H, et al. Study on the tolerance and adaptation of rats to Angiostrongylus cantonensis infection. Parasitol Res. 2017;116(7):1937–45.

    Article 
    PubMed 

    Google Scholar
     

  • Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature. 2012;489(7415):220–30.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Diaz HR, Wang S, Anuar F, Qian Y, Bjorkholm B, Samuelsson A, et al. Normal gut microbiota modulates brain development and behavior. Proc Natl Acad Sci U S A. 2011;108(7):3047–52.

    Article 

    Google Scholar
     

  • Moeller AH, Suzuki TA, Phifer-Rixey M, Nachman MW. Transmission modes of the mammalian gut microbiota. Science. 2018;362(6413):453–7.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Vannier N, Mony C, Bittebiere AK, Michon-Coudouel S, Biget M, Vandenkoornhuyse P. A microorganisms’ journey between plant generations. Microbiome. 2018;6(1):79.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Chalifour B, Li J. Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa). Anim Microbiome. 2021;3(1):49.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kivistik C, Knobloch J, Kairo K, Tammert H, Kisand V, Hildebrandt JP, et al. Impact of salinity on the gastrointestinal bacterial community of Theodoxus fluviatilis. Front Microbiol. 2020;11:683.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Osorio JB, de Mattos PL, Giongo A, Marconatto L, Potriquet J, Candido R, et al. Mollusk microbiota shift during Angiostrongylus cantonensis infection in the freshwater snail Biomphalaria glabrata and the terrestrial slug Phillocaulis soleiformis. Parasitol Res. 2020;119(8):2495–503.

    Article 
    PubMed 

    Google Scholar
     

  • Van Horn DJ, Garcia JR, Loker ES, Mitchell KR, Mkoji GM, Adema CM, et al. Complex intestinal bacterial communities in three species of planorbid snails. J Molluscan Stud. 2012;78:74–80.

    Article 

    Google Scholar
     

  • Liu C, Zhang Y, Ren Y, Wang H, Li S, Jiang F, et al. The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation. Gigascience. 2018;7(9):1–13.

  • Guo Y, Zhang Y, Liu Q, Huang Y, Mao G, Yue Z, et al. A chromosomal-level genome assembly for the giant African snail Achatina fulica. Gigascience. 2019;8(10):1–8.

  • Henning F, Meyer A. The evolutionary genomics of cichlid fishes: explosive speciation and adaptation in the postgenomic era. Annu Rev Genomics Hum Genet. 2014;15:417–41.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Muschick M, Indermaur A, Salzburger W. Convergent evolution within an adaptive radiation of cichlid fishes. Curr Biol. 2012;22(24):2362–8.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Alejandrino A, Puslednik L, Serb JM. Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae). BMC Evol Biol. 2011;11:164.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Baldo L, Pretus JL, Riera JL, Musilova Z, Bitja NA, Salzburger W. Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes. ISME J. 2017;11(9):1975–87.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Zhang Z, Xu D, Wang L, Hao J, Wang J, Zhou X, et al. Convergent evolution of rumen microbiomes in high-altitude mammals. Curr Biol. 2016;26(14):1873–9.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Moeller AH, Sanders JG. Roles of the gut microbiota in the adaptive evolution of mammalian species. Philos Trans R Soc Lond B Biol Sci. 1808;2020(375):20190597.


    Google Scholar
     

  • Dvergedal H, Sandve SR, Angell IL, Klemetsdal G, Rudi K. Association of gut microbiota with metabolism in juvenile Atlantic salmon. Microbiome. 2020;8(1):160.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Zhang J, Liu YX, Zhang N, Hu B, Jin T, Xu H, et al. NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice. Nat Biotechnol. 2019;37(6):676–84.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Browne HP, Neville BA, Forster SC, Lawley TD. Transmission of the gut microbiota: spreading of health. Nat Rev Microbiol. 2017;15(9):531–43.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Li F, Li C, Chen Y, Liu J, Zhang C, Irving B, et al. Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle. Microbiome. 2019;7(1):92.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Portet A, Toulza E, Lokmer A, Huot C, Duval D, Galinier R, et al. Experimental infection of the Biomphalaria glabrata vector snail by Schistosoma mansoni parasites drives snail microbiota dysbiosis. Microorganisms. 2021;9(5):1084.

  • Li H, Hambrook JR, Pila EA, Gharamah AA, Fang J, Wu X, et al. Coordination of humoral immune factors dictates compatibility between Schistosoma mansoni and Biomphalaria glabrata. Elife. 2020;9:e51708.

  • Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, et al. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nat Commun. 2017;8:15451.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Dejong RJ, Morgan JA, Paraense WL, Pointier JP, Amarista M, Ayeh-Kumi PF, et al. Evolutionary relationships and biogeography of Biomphalaria (Gastropoda: Planorbidae) with implications regarding its role as host of the human bloodfluke. Schistosoma mansoni Mol Biol Evol. 2001;18(12):2225–39.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Fernandez MA, Thiengo SC. Susceptibility of Biomphalaria straminea from Peixe Angical dam, Tocantins, Brazil to infection with three strains of Schistosoma mansoni. Mem Inst Oswaldo Cruz. 2010;105(4):488–91.

    Article 
    PubMed 

    Google Scholar
     

  • Fernandez MA, Pieri OS. Infection by Schistosoma mansoni Sambon 1907 in the first four months of life of Biomphalaria straminea (Dunker, 1848) in Brazil. Mem Inst Oswaldo Cruz. 2001;96(Suppl):185–92.

    Article 
    PubMed 

    Google Scholar
     

  • Gandasegui J, Fernandez-Soto P, Muro A, Simoes BC, Lopes DMF, Loyo R, et al. A field survey using LAMP assay for detection of Schistosoma mansoni in a low-transmission area of schistosomiasis in Umbuzeiro, Brazil: assessment in human and snail samples. PLoS Negl Trop Dis. 2018;12(3): e6314.

    Article 

    Google Scholar
     

  • Rani A, Sharma A, Rajagopal R, Adak T, Bhatnagar RK. Bacterial diversity analysis of larvae and adult midgut microflora using culture-dependent and culture-independent methods in lab-reared and field-collected Anopheles stephensi-an Asian malarial vector. BMC Microbiol. 2009;9:96.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lin D, Zheng X, Sanogo B, Ding T, Sun X, Wu Z. Bacterial composition of midgut and entire body of laboratory colonies of Aedes aegypti and Aedes albopictus from southern China. Parasit Vectors. 2021;14(1):586.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Bascunan P, Nino-Garcia JP, Galeano-Castaneda Y, Serre D, Correa MM. Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors. Microbiome. 2018;6(1):148.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kokou F, Sasson G, Friedman J, Eyal S, Ovadia O, Harpaz S, et al. Core gut microbial communities are maintained by beneficial interactions and strain variability in fish. Nat Microbiol. 2019;4(12):2456–65.

    Article 
    PubMed 

    Google Scholar
     

  • Wang X, Tsai T, Deng F, Wei X, Chai J, Knapp J, et al. Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria. Microbiome. 2019;7(1):109.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lin D, Song Q, Zhang Y, Liu J, Chen F, Du S, et al. Bacillus subtilis attenuates hepatic and intestinal injuries and modulates gut microbiota and gene expression profiles in mice infected with Schistosoma japonicum. Front Cell Dev Biol. 2021;9:766205.

  • Li LH, Lv S, Lu Y, Bi DQ, Guo YH, Wu JT, et al. Spatial structure of the microbiome in the gut of Pomacea canaliculata. BMC Microbiol. 2019;19(1):273.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Hu Z, Tong Q, Chang J, Yu J, Li S, Niu H, et al. Gut bacterial communities in the freshwater snail Planorbella trivolvis and their modification by a non-herbivorous diet. PeerJ. 2021;9: e10716.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kort R, Caspers M, van de Graaf A, van Egmond W, Keijser B, Roeselers G. Shaping the oral microbiota through intimate kissing. Microbiome. 2014;2:41.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Maqsood R, Rodgers R, Rodriguez C, Handley SA, Ndao IM, Tarr PI, et al. Discordant transmission of bacteria and viruses from mothers to babies at birth. Microbiome. 2019;7(1):156.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Asnicar F, Manara S, Zolfo M, Truong DT, Scholz M, Armanini F, et al. Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling. mSystems. 2017;2(1):e00164–16.

  • Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, et al. Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome. Cell Host Microbe. 2018;24(1):133–45.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Backhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P, et al. Dynamics and stabilization of the human gut microbiome during the first year of life. Cell Host Microbe. 2015;17(5):690–703.

    Article 
    PubMed 

    Google Scholar
     

  • Avershina E, Lundgard K, Sekelja M, Dotterud C, Storro O, Oien T, et al. Transition from infant- to adult-like gut microbiota. Environ Microbiol. 2016;18(7):2226–36.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, et al. Environment dominates over host genetics in shaping human gut microbiota. Nature. 2018;555(7695):210–5.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Delsuc F, Metcalf JL, Wegener PL, Song SJ, Gonzalez A, Knight R. Convergence of gut microbiomes in myrmecophagous mammals. Mol Ecol. 2014;23(6):1301–17.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, et al. Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats. mBio. 2020;11(1):e02901–19.

  • Dickson LB, Ghozlane A, Volant S, Bouchier C, Ma L, Vega-Rua A, et al. Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome. Parasit Vectors. 2018;11(1):207.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Aylward FO, Suen G, Biedermann PH, Adams AS, Scott JJ, Malfatti SA, et al. Convergent bacterial microbiotas in the fungal agricultural systems of insects. mBio. 2014;5(6):e2077.

  • Davenport ER, Sanders JG, Song SJ, Amato KR, Clark AG, Knight R. The human microbiome in evolution. BMC Biol. 2017;15(1):127.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Rosenberg E, Zilber-Rosenberg I. The hologenome concept of evolution after 10 years. Microbiome. 2018;6(1):78.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Moeller AH, Li Y, Mpoudi NE, Ahuka-Mundeke S, Lonsdorf EV, Pusey AE, et al. Rapid changes in the gut microbiome during human evolution. Proc Natl Acad Sci U S A. 2014;111(46):16431–5.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature. 2014;509(7500):357–60.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, et al. Population-level analysis of gut microbiome variation. Science. 2016;352(6285):560–4.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Costea PI, Hildebrand F, Arumugam M, Backhed F, Blaser MJ, Bushman FD, et al. Enterotypes in the landscape of gut microbial community composition. Nat Microbiol. 2018;3(1):8–16.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Cho I, Yamanishi S, Cox L, Methe BA, Zavadil J, Li K, et al. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature. 2012;488(7413):621–6.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Tran T, Cousin FJ, Lynch DB, Menon R, Brulc J, Brown JR, et al. Prebiotic supplementation in frail older people affects specific gut microbiota taxa but not global diversity. Microbiome. 2019;7(1):39.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Yip LY, Aw CC, Lee SH, Hong YS, Ku HC, Xu WH, et al. The liver-gut microbiota axis modulates hepatotoxicity of tacrine in the rat. Hepatology. 2018;67(1):282–95.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Rhoades N, Barr T, Hendrickson S, Prongay K, Haertel A, Gill L, et al. Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease. Genome Biol. 2019;20(1):173.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Stephens WZ, Burns AR, Stagaman K, Wong S, Rawls JF, Guillemin K, et al. The composition of the zebrafish intestinal microbial community varies across development. ISME J. 2016;10(3):644–54.

    Article 
    PubMed 

    Google Scholar
     

  • Kim PS, Shin NR, Lee JB, Kim MS, Whon TW, Hyun DW, et al. Host habitat is the major determinant of the gut microbiome of fish. Microbiome. 2021;9(1):166.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Silva TM, Melo ES, Lopes AC, Veras DL, Duarte CR, Alves LC, et al. Characterization of the bacterial microbiota of Biomphalaria glabrata (Say, 1818) (Mollusca: Gastropoda) from Brazil. Lett Appl Microbiol. 2013;57(1):19–25.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Cardoso AM, Cavalcante JJ, Cantao ME, Thompson CE, Flatschart RB, Glogauer A, et al. Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes. PLoS ONE. 2012;7(11): e48505.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Cardoso AM, Cavalcante JJ, Vieira RP, Lima JL, Grieco MA, Clementino MM, et al. Gut bacterial communities in the giant land snail Achatina fulica and their modification by sugarcane-based diet. PLoS ONE. 2012;7(3): e33440.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Charrier M, Fonty G, Gaillard-Martinie B, Ainouche K, Andant G. Isolation and characterization of cultivable fermentative bacteria from the intestine of two edible snails, Helixpomatia and Cornu aspersum (Gastropoda: Pulmonata). Biol Res. 2006;39(4):669–81.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Takacs-Vesbach C, King K, Van Horn D, Larkin K, Neiman M. Distinct bacterial microbiomes in sexual and asexual Potamopyrgus antipodarum, a New Zealand freshwater snail. PLoS ONE. 2016;11(8): e161050.

    Article 

    Google Scholar
     

  • Huot C, Clerissi C, Gourbal B, Galinier R, Duval D, Toulza E. Schistosomiasis vector snails and their microbiota display a phylosymbiosis pattern. Front Microbiol. 2019;10:3092.

    Article 
    PubMed 

    Google Scholar
     

  • Lu D, Tiezzi F, Schillebeeckx C, Mcnulty NP, Schwab C, Shull C, et al. Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth. Microbiome. 2018;6(1):4.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lipsitch M, Siller S, Nowak MA. The evolution of virulence in pathogens with vertical and horizontal transmission. Evolution. 1996;50(5):1729–41.

    Article 
    PubMed 

    Google Scholar
     

  • Brown SP, Cornforth DM, Mideo N. Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control. Trends Microbiol. 2012;20(7):336–42.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, et al. Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation. Science. 2017;358(6361):359–65.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Videvall E, Song SJ, Bensch HM, Strandh M, Engelbrecht A, Serfontein N, et al. Early-life gut dysbiosis linked to juvenile mortality in ostriches. Microbiome. 2020;8(1):147.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Graham S, Metcalf AL, Gill N, Niemiec R, Moreno C, Bach T, et al. Opportunities for better use of collective action theory in research and governance for invasive species management. Conserv Biol. 2019;33(2):275–87.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Duval D, Galinier R, Mouahid G, Toulza E, Allienne JF, Portela J, et al. A novel bacterial pathogen of Biomphalaria glabrata: a potential weapon for schistosomiasis control? PLoS Negl Trop Dis. 2015;9(2): e3489.

    Article 

    Google Scholar
     

  • Teem JL, Alphey L, Descamps S, Edgington MP, Edwards O, Gemmell N, et al. Genetic biocontrol for invasive species. Front Bioeng Biotechnol. 2020;8:452.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Wang S, Dos-Santos A, Huang W, Liu KC, Oshaghi MA, Wei G, et al. Driving mosquito refractoriness to Plasmodium falciparum with engineered symbiotic bacteria. Science. 2017;357(6358):1399–402.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Gao H, Bai L, Jiang Y, Huang W, Wang L, Li S, et al. A natural symbiotic bacterium drives mosquito refractoriness to Plasmodium infection via secretion of an antimalarial lipase. Nat Microbiol. 2021;6(6):806–17.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Hua ZL, Wang YF, Zhang JY, Li XQ, Yu L. Removal of perfluoroalkyl acids and dynamic succession of biofilm microbial communities in the decomposition process of emergent macrophytes in wetlands. Sci Total Environ. 2022;834:155295.

  • Mendoza-Barbera E, Merino S, Tomas J. Surface glucan structures in Aeromonas spp. Mar Drugs. 2021;19(11):649.

  • Yu K, Li P, Chen Y, Zhang B, Huang Y, Huang FY, et al. Antibiotic resistome associated with microbial communities in an integrated wastewater reclamation system. Water Res. 2020;173: 115541.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Carney RL, Labbate M, Siboni N, Tagg KA, Mitrovic SM, Seymour JR. Urban beaches are environmental hotspots for antibiotic resistance following rainfall. Water Res. 2019;167: 115081.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Chen CY, Chen CK, Chen YY, Fang A, Shaw GT, Hung CM, et al. Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests. Microbiome. 2020;8(1):129.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Dominguez-Bello MG, De Jesus-Laboy KM, Shen N, Cox LM, Amir A, Gonzalez A, et al. Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer. Nat Med. 2016;22(3):250–3.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Moor J, Wuthrich T, Aebi S, Mostacci N, Overesch G, Oppliger A, et al. Influence of pig farming on human gut microbiota: role of airborne microbial communities. Gut Microbes. 2021;13(1):1–13.

    Article 
    PubMed 

    Google Scholar
     

  • Muegge BD, Kuczynski J, Knights D, Clemente JC, Gonzalez A, Fontana L, et al. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science. 2011;332(6032):970–4.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Baniel A, Amato KR, Beehner JC, Bergman TJ, Mercer A, Perlman RF, et al. Seasonal shifts in the gut microbiome indicate plastic responses to diet in wild geladas. Microbiome. 2021;9(1):26.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Kang W, Kim PS, Tak EJ, Sung H, Shin NR, Hyun DW, et al. Host phylogeny, habitat, and diet are main drivers of the cephalopod and mollusk gut microbiome. Anim Microbiome. 2022;4(1):30.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Du S, Sun X, Zhang J, Lin D, Chen R, Cui Y, et al. Metagenome-assembled genomes reveal mechanisms of carbohydrate and nitrogen metabolism of schistosomiasis-transmitting vector Biomphalaria glabrata. Microbiol Spectr. 2022;10(2): e184321.

    Article 

    Google Scholar
     

  • Zhu GL, Tang YY, Limpanont Y, Wu ZD, Li J, Lv ZY. Zoonotic parasites carried by invasive alien species in China. Infect Dis Poverty. 2019;8(1):2.

    Article 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Twining JP, Lawton C, White A, Sheehy E, Hobson K, Montgomery WI, et al. Restoring vertebrate predator populations can provide landscape-scale biological control of established invasive vertebrates: Insights from pine marten recovery in Europe. Glob Chang Biol. 2022;28(18):5368–84.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Zheng X, Zhang D, Li Y, Yang C, Wu Y, Liang X, et al. Incompatible and sterile insect techniques combined eliminate mosquitoes. Nature. 2019;572(7767):56–61.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Baldacchino F, Caputo B, Chandre F, Drago A, Della TA, Montarsi F, et al. Control methods against invasive Aedes mosquitoes in Europe: a review. Pest Manag Sci. 2015;71(11):1471–85.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Gao H, Cui C, Wang L, Jacobs-Lorena M, Wang S. Mosquito microbiota and implications for disease control. Trends Parasitol. 2020;36(2):98–111.

    Article 
    PubMed 

    Google Scholar
     

  • Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870–4.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Lin D, Song Q, Liu J, Chen F, Zhang Y, Wu Z, et al. Potential gut microbiota features for non-invasive detection of schistosomiasis. Front Immunol. 2022;13: 941530.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Magoc T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011;27(21):2957–63.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013;10(1):57–9.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–6.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27(16):2194–200.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 2011;21(3):494–504.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     

  • Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10(10):996–8.

    Article 
    CAS 
    PubMed 

    Google Scholar
     

  • Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41(Database issue):D590-6.

    CAS 
    PubMed 

    Google Scholar
     

  • Friedman J, Alm EJ. Inferring correlation networks from genomic survey data. PLoS Comput Biol. 2012;8(9): e1002687.

    Article 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar
     



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